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1,587 repositories measured. Index updated 11 Oct 2026.

Python 608

JavaScript 248

HTML 195

TypeScript 189

C++ 147

C 140

Shell 135

Java 101

CSS 95

Go 72

Jupyter Notebook 69

Rust 64

SCSS 38

Ruby 35

PHP 34

Makefile 33

Dart 31

Julia 28

Scala 27

Kotlin 23

Dockerfile 22

Perl 21

CMake 20

Python 608

JavaScript 248

HTML 195

TypeScript 189

C++ 147

C 140

Shell 135

Java 101

CSS 95

Go 72

Jupyter Notebook 69

Rust 64

SCSS 38

Ruby 35

PHP 34

Makefile 33

Dart 31

Julia 28

Scala 27

Kotlin 23

Dockerfile 22

Perl 21

CMake 20

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9 repositories matchClear allProjects measured on 20 or more outside pull requests come first; a perfect record over a handful is partly luck.

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sanger-tolmetagenomeassembly

A Nextflow pipeline for the assembly and binning of metagenomes from PacBio HiFi and Illumina Hi-C sequencing data.

First reply: Mostly unanswered; 23 outside PRs
Merged: 91%; of 23 closed
Free issues: 0; available

NextflowPythonGSoC 2025

Updated 11 Oct 2026

sanger-tolreadmapping

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

First reply: 8 h; 14 outside PRs
Merged

sanger-tolascc

A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.

First reply: Not enough data; 1 outside PRs
Merged

sanger-tolblobtoolkit

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

First reply: Not enough data; 2 outside PRs
Merged

sanger-tolcurationpretext

A Nextflow DSL2 pipeline for pretext generation in curation

First reply: Not enough data; 4 outside PRs
Merged

sanger-tolgenomeassembly

A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project

First reply: Mostly unanswered; 19 outside PRs
Merged

sanger-tolgenomenote

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is pa

First reply: Not enough data; 1 outside PRs
Merged

sanger-toltreeval

Pipelines for the production of Treeval data

First reply: Not enough data; 2 outside PRs
Merged

sanger-tolvariantcalling

Nextflow DSL2 pipeline to call variants on long read alignment.

First reply: Not enough data; 2 outside PRs
Merged

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